Data Science
Workshops
Community analysis using vegan
This is a workshop on basic tools for community analysis in vegan
that was given for UCSB EEMB and UCSC SCRUBs.
- RPubs: vegan cheat sheet
Putting the FUN in functions
This is a workshop on writing functions in R, with editing from Sam Csik and Juliette Verstaen.
- RPubs
- Github repository
- learnr tutorial
Packages
calecopal
: a California-inspired package of color palettes
This is a collection of 45 color palettes, all inspired by California ecosystems. This was built with Heili Lowman and Ana Sofia Guerra, and code was taken directly from Karthik Ram’s wesanderson
package.
- Github repository
Publications
Fungal community data
Data and analysis to accompany Bui et al., “Soil fungal community composition and functional similarity shift across distinct climatic conditions.” FEMS Microbiology Ecology. Published 22 September 2020. https://doi.org/10.1093/femsec/fiaa193.
- Github repository
Code notes
I created this website in October 2022, when Quarto was (and still is) the cool, new tool for website building. I’ve left a few “code notes” at the bottom of various pages for anyone thinking of creating a website using Quarto wanting to see the underlying code. I drew heavily on Sam Csik’s Quarto resources, including “Creating your personal website using Quarto”, “Customizing Quarto Websites”, and “Adding a blog to your existing Quarto website”. The Github repo for this site is here. Happy Quarto-ing!